Saturday, July 27, 2013

Life of an academe and pictures of mushrooms


Tomorrow I head out to another conference. This one is the annual Wildlife Disease Association Meeting. Last year it was in Lyon, France. This year it is in .....Knoxville, TN. Seems like a jump, but maybe people in France would consider Knoxville to be the equivalent of Lyon. Then again, maybe not. 
The picture above is from last nights dinner. A couple of friends are moving away and we went out to our favorite place. I, for some reason, ordered the pickle platter. That's the life of academia: all your friends move away. 

Indigo milkcap

The conference should be great because I'll see friends who have moved away. 
Before I go, I'm making my usual lists. And I'm also scrambling to generate some new data. I'm sure most students are as well. Conferences sometimes provide an impetus for long-put-off nights in the lab. 
"Puff" mushrooms

I'll be in Knoxville for a week. There will be some days and nights where I explore the city. I also hope to live-tweet some of the symposia. 


It should be a fun week of learning and adventure!



Friday, July 26, 2013

On the edge


Sometimes in science you feel like you're on the edge. On the edge of discovery. On the edge of sanity. On the edge of summer. 

Today has felt like all of the above. Working on a PhD is one of the most masochistic ventures a person can do. It can be incredibly rewarding: an idea develops; you learn constanty. It can also be frustratingly menial. 

The personalities in science often have a chip on their shoulders. Underlings often suffer. 

In my case, the personal and professional overlap in big ways. Few of my friends in my phd town are non-science. After several years, all the social circles have collided. 

A professor in undergrad once told me that once you get to the edge of what's known, that's when science happens. 

Most of the time, I feel like a drone in my work and a loser in my personal life. 


On the upside, I am generating some great data. I am on the edge of science. 

Friday, July 19, 2013

Florida panthers!

Here is a link to a a four-part series focusing on Florida panthers in the wild: Florida panthers

The Florida panther is an endangered population of Puma concolor residing in southern Florida. Most people in the US know Puma concolor as mountain lions or cougars, although there are many common names.

Although they were almost extirpated from the everglades due to anthropogenic forces and inbreeding depression, they are one of the US's wildlife conservation genetics success stories. The population rebounded from less than 30 in the 1980s to over 150 panthers.

More on Florida panthers can be found here: http://www.floridapanthernet.org/


The pictures below are from some of my field research in the Florida everglades:
Barred Owl






Thursday, July 18, 2013

New Favorite Website!

Quick post today while I work up my hiking trip.
I just found this amazing new website that allows you to view wildlife in real time streaming videos. My favorite so far is the puffin nest. 

Tuesday, July 16, 2013

Top 5 reasons WV is the best place on Earth

Long-in-the making post from a month ago: 

This past weekend, I endured 20 hours of driving (roundtrip) to visit my family in West Virginia. As a graduate student trying to finish dissertation research, even taking a few days off to see your parents feels like an imposition. That statement makes me feel incredibly guilty, but it's true. A few days away from summer students and research and all the annoyances that come with science may seem like a vacation, but four days off equals eight days behind. Part of that is because my PI is out of town and half the summer students depend on me to keep their projects going. Ah well, that's what I get for being an overachiever and/or too nice.

All the photos below are from the eastern region of the state. 


While driving, I contemplated why WV should count as a travel destination. I'm a big fan of lists (Buzzfeed is a guilty pleasure of mine) so I thought I'd list 5 reasons why WV is the best place on Earth. 


1. Gorgeous scenery: from the Appalachian Mountains, to the Ohio River Valley, WV chock-full of beautiful vistas. 

View from Dolly Sods across Canaan Valley, WV




2. Moonshine: celestial and otherwise. West Virginia is actually one of the best star-watching places east of the Mississippi River in the United States. And the state has a long history of 'shining. 

 3. Interesting Flora: The photo above is some mountain laurel.  Mountain laurel and rhododendron are such a integral part of my WV memories. People had rhododendron and azaleas in their yards. We took Easter photos in front of the giant round bushes. Mountain laurel hints at the untamed areas of WV. I remember hiking up creek beds in the eastern part of the state and only seeing mountain laurel on both sides. 


 4.Wild and Wonderful: the state's motto. Eloquent and succinct. 





5. It's a quiet life. Time seems to be captured in the hills. Generations pass. Traditions are handed down. Although the advent of urbanization and suburbanization never stops,  it seems to be slowed by a decade or two in West Virginia...






Monday, July 15, 2013

Friday, July 12, 2013

A summer day in West Virginia

I'm in my favorite place in the world: West Virginia. I suppose most people are partial to where they grew up. I am no exception, alhough I hope these next two posts convince you that West Virginia is one of the most under-the-radar beautiful and fun places to visit. 
I'm home visiting family and avoiding my dissertation frustrations. Most of my family is nestled in one area so it's easy to see everyone all at once. I'm also here to see my childhood best friend. Tomorrow we're going hiking in Canaan Valley in the eastern part of the state. 
The long drive to get to home is usually worth it for me. Although I love to travel, I do not like to drive and I especially don't like to drive by myself for the better part of a day. Sooo there usually has to be a good reason. 
I arrived last night and not only was this waiting for me, but also a glass of wine. And some flying squirrel (Glaucomys sp.) acrobatics. I'll try to get a picture if they decide to glide in later this evening as well. 
One of my life goals is to learn my fungi better. This guy was next to some "Bleeding Heart" plants my mom has. Because of all the rain this year, her green thumb has paid off (in petals).
"Day lilly "


"Black-eyed Susans"




Home. 

Photos from my hike and probably more gratuitous flower shots coming up in the next few days. 

Monday, July 8, 2013

Links between habitat destruction and emerging infectious diseases

Although this article came out a year ago, it's a great introduction to the links between the use of wildlife, habitat destruction and emerging infectious disease, aka, my field of study:


The Ecology of Disease


Sunday, July 7, 2013

Conservation Woes

View of the Western Hills, Kunming City, PRC
Two articles have struck a chord in me this week. Both of them are well-written and both of them are utterly depressing from a conservation standpoint. The first article talks about the success of the Saiga: an endangered antelope with a range that spans several large eastern countries including Russia, China, Mongolia and Kazakhstan. John Platt's article talks about the recent success of the population in Kazakhstan and the reasons behind it (minimizing human impact): Saiga Success: Critically Endangered Antelope Population Doubles in 5 Years. While the article has a hopeful tone, what makes me blue is the fact that this animal is poached for use in "traditional medicine" and as an aphrodisiac. It's a reminder that not everyone views wildlife as I do: with respect.

Turtles for sale in the "Bird and Flower Market", Kunming City, PRC-- it was unclear if they were for consumption or for pets. Judging by their poor conditions, neither option was probably well regulated. 
The second article to break my heart this week concerned migrating birds and the countries surrounding the Mediterranean Sea. The article is by Jonathan Franzen, one of my recently discovered favorite authors. In his article, Franzen touches on almost every wildlife conservation issue that exists: blaming climate change instead of addressing issues; traditional medicine and aphrodisiacs; wildlife disease; habitat fragmentation; political conflict and corruption; human development; ignorance. The information is sound and well-written. If you read his article, you'll notice the indiscriminate killing of all migratory birds by people who reside in and people who travel to Mediterranean countries where hunting is not regulated. Franzen's article is brilliant and I hope it gets a lot of press: Last Song for Migrating Birds
Birds, inhumanely caged for sale in the "Bird and Flower Market", Kunming City, PRC--this was one of many many stalls. 
North America had the same problems with indiscriminate killing of wildlife before strict hunting and conservation laws began around the turn of the 20th century. Many species are extinct now because of our unregulated harvesting practices. We are still seeing the effects of these losses on the ecosystems. For example: the complicated relationship between predator removal, the rise of the white-tailed deer, suburbanization, and the increase in the tick species that transmits Lyme disease. Although we still have numerous problems, many of our species such as waterfowl, have populations that are relatively healthy enough that they can be managed for legal hunting. We also have the Duck Stamp program: in which 98 cents/dollar of the purchased duck stamps is used to buy and lease and protect waterfowl habitat-- and any other wildlife that utilizes it (FYI anyone, not just hunters can purchase these. They are collectors items/conservation tools). In addition, there is the Migratory Bird Treaty Act, which helps to protect songbirds and many other bird species.
Bird and Flower Market, Kunming City, People's Republic of China. Notice the bins full of amphibians, reptiles and fish. 
I have a lot more to say about wildlife conservation and the uses of wildlife worldwide. As someone who studies wildlife ecology and wildlife disease for a living, articles and facts like these are part of my daily life, but sometimes, like this week, they remind me how precarious the situation is for wildlife in other countries.

Thursday, July 4, 2013

Post-trip Slump

Since returning from Quebec on Sunday, I've been in a scientific slump. I'm in the middle of a cDNA prep and I can't tell if it's my primers or the sequencing facility. Also I had to come back and tell the summer student that half of what she had done since I was gone was invalid. I stressed that it was not her fault, but she took it pretty hard. Which makes me feel terrible because PCR is not difficult, just tedious and at times frustrating when someone else has contaminated the primers.

Burger, fries w/ mayo, and a big ol' glass of red. Welcome to Canada young parasitologist. 

Because of that and a few other things, for the past few days, I've felt like a scientific failure. Logically, I know I shouldn't feel that way. I applied for my first post-doc and have a phone interview this Friday and a likely interview/seminar in the future. I have several publications under my belt and lined up. One is almost, almost done and it has some pretty exciting findings (at least I think so). People at the conference treated me well and were interested in my research for the most part.

It's a fortress! Quebec City, Canada

But, sometimes things hit me all at once and I become stressed. And I don't deal well with my brain and its negative rumination. I tell myself that I'm a procrastinator, that I'd be happier if I had chosen a different career path, that no one believes I'm a good scientist...and then the personal attacks on myself start. It usually goes on for a few days and then I snap out of it. Both personal and professional things trigger it, and sometimes that's rough. It's difficult to be productive if you just feel like staying under the covers. Since not being productive is what I'm beating yourself up about, it becomes a bit of a cycle. At least in my head since I usually have too many responsibilities (i.e. my dog) to stay in bed all day and so I end up in the lab eventually.

View of the Château Frontenac from below the cliff. Quebec City, Canada. 
Soo...today I still feel terrible about myself and my research and my future, but I am working on it. I recognize that this is just a biochemical imbalance and thought motif that occurs in my mind. I can change it/fix it. Like Shakespeare's Hamlet said, "There is nothing either good or bad, but thinking makes it so." I may have paraphrased a bit, but there it is. I've invested in a cognitive behavior book and I'm following the lessons. Writing this blog is helping too.

He was playing "Annie's Song" by John Denver which is one of my favorites. 
Not really a science-post or a travel-post despite the pictures. Quebec was lovely and I enjoyed my time off. I'll work though my issues and be a better scientist and a better person for it.

Love,
Barbara